DreINT0103038 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31892904-31893316:+
Coord C1 exon
chr5:31892904-31893107
Coord A exon
chr5:31893108-31893188
Coord C2 exon
chr5:31893189-31893316
Length
81 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGA
5' ss Score
0.47
3' ss Seq
GTTGTGTTCATCTCTGACAGATT
3' ss Score
8.39
Exon sequences
Seq C1 exon
ACTTCCACCGCGATACATTTTCCACTTTCTATCTGAAGTCCCAAATAAACCGACTGAGCATCTCCAGACAGTGGATAATAAAAGCTCTCCCACCTCACTGCGGCCGTTTCCAGCTCCACTAGTGTTTAATCAGAGAGTCACTCATACTGCACATTTCCAGGACGTCAGACACATCGAGTTCGACATCACAGGCTCTAACATTGA
Seq A exon
GTATGAAATATTGAGAATAATATATAGATATTAAATATCACGTCACAAAGGAGTATTAAAGGTTGTGTTCATCTCTGACAG
Seq C2 exon
ATTCAGTGCCGGGGACATTGTAATGATGAGACCCTGTAATACTGCAGAGGATGTGGAGCAGCTCTGTCAACTACTAAAACTTGACCCAGAGAGTTACTTTACACTGACCCCTACAGACAGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(17.7=56.5)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGTCAGACACATCGAGT
R:
CTGCTGTCTGTAGGGGTCAGT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]