GgaINT0126432 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1345810-1348495:+
Coord C1 exon
chr17:1345810-1346016
Coord A exon
chr17:1346017-1348373
Coord C2 exon
chr17:1348374-1348495
Length
2357 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
AGGTCCTGCTGCATCTGCAGGTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
CCTGCCCCCTAGATACACCCTGCACTACCTGGCTGAGGACTCCTTGCACTCTGACAGCAGCCTGCTCCAGCCAACACCACCCAGGGCTCTTCCTTCTGAGCTACATCCCTTTGCTGCCCGGATGGTGTCCAACCAGCGCATCACGGCCGAATCCCATTTCCAGGATGTCCGGCTCATTGAGTTTGATGTCACAGGATCAGGGATCAC
Seq A exon
GTGAGTGTTTTTCTGACTCCCCCAAGCTTTTTTTGTGTGTGAAATCAGAATTCCTTATTCCCTCTGTTCTTCTTCAGTAATGCCTGATACTGCAGCCTGCTGTGCTGTCTGTCCCACTCCATGACAAAGTCATGGCATAGGAGGATGTAGCAGGGGAGGCAGGTGACCGTCATGGCTGTGCAAGGACCTGCAGCTAAAACTGAGAGAAAAGGGGGAAATGCATAGAAGGTGGAAGCAGGGTTGTGTATCCTGGGAGGAATACAGGGCTGTTGTCTGTGTGTGTAGAGATAGGATTAGGAAGCCAAGGCGCAGATGGAGCTGAACTTGGCGAGGGATGTGAAAGATAACAAGAAGGGGTTCTACAGGTATGTAGGCAGGAGGAGATGGGCCAAGGAGAGTGTTCCCCCTCTGATGAAAGGCAATGGGGAGCTGGCTTCCTCAGACATGGAAAAAGCTGAGGTACTCAATGAGTGCTTTGCCTCAGTCTTCACGGGTGGTCAGGCTTCTTGTGTCTGCCAGGACCACGAGCTTCTGGGTGGGGGTGTGGGGAGTGGTTTCTGTCCCACTGTAATGATGGACCAAGTCCGAGTCCTCCTCATGAAATTGAATAAGTCCATGGGGCCGGATGATAGCCATCCTAGGGTTCTGAAAGAGATGGCTGATGTGGTTGCCGAGCCGCTCTCCATCATATTTGAAAAATCATGTCTGTCTGGTGAAGTCCCCGGTGACTGGAAAAAGGGAAACATTACTCCCATTTTTAAGAAAGGGGGAAAGGAAGACCTGGGGAACTACAGGTCGGTGAGCCTCACCTCTGTGCCTGGAAAGATCATGGAGCAGATCCTCCTAGAAGCTGTGTTAGGGCACATATGGGATAAAGAGGTGATCCAAGACAGCCAGCATGGCTTCACCAAGGGCAGATTGTACCTGACCAATCTGGTGGCCTTCTACGATGGAGTGGCAGCTTTGGTGGATGGGAGAAGGGCGGTGGATGTCATCTACCTGGACTTCTGCAAGGCCTTTCACGTGGTCCCTCACCACATCCTTCTCTCTAAATTGGAGAAGTGTGGATTTGATGAAGGACTGTTCAGTGGATTAGGAATTGGCTGGCTGGATGCAGCCAAAGGGTTGTGATCAGTGGGTCTGTGTCAGGGTGGAGACCAGTCACAGTCAGTGTCCCTCAGGGGTCGGTCTTGGGACTGGTGCTCTTCAACATCTTCATTAGTGACACAGATGATGGCACCGAGTGCACCCTCAGCAAGTTTGCGGATGACACCAAGCTGAGTGGTGCAGTCGATACGTTGGAAGGAAGGGAAGCCATCCAGAGGGACCTGGACAGGCTGGAGAAGTGGGCCCATGGGAACCTAAGGAGGTTCACTAAGGCCAAGTGCAGGGTGCTGCACTTGTGTCGGTGCAATCCCAGGTATTTATATAAACTGGGGGAAGGTCTCCTTGAGAGCAGCCCTGCGGAGAAGGACTTGGGGGTCCTGGTAGATGAGAAGCTGGACATGAGCCTGCAGTGTGCGCTTGCAGCCCAGAAGGCCAACTGTGTTCTGGGCTGCATTAAAAAAGGGGTGGCCAGCAGGGAGAGGGAGGTGATTGTGCCCCTCTACTCAGCTCTTGTGAGGCCCCATCTGCAGTACTGTATACTACAGTACTGCATACTGCAGGCCTGGGGCCCCCAGTACAGGAAGGACTTGGAGCTCTTGGAGTGGGTCCAGAGGAGGGCAACTAAGATGATCAGAGGGCTGGAGCACCTCTCCTATGAGGAAAGGTTGAGGGAACTGGGCTTGTTTAGTTTGGAGAGGAGAAGGCTGCTGGGAGACCTCATTGTGGCCTTCCAGTACTTGAAGGGAGTGTATAAACAGGAGGGGGAATGACTGTTTACAAGGGTGGATGGCAATAGGACAAGGGGGAATGCTTTTAAACTGGGACAGGGGAGGTTTAGGTTGGATATTAGGAAGAAGTTTTTCACCCAGAGGGTGGTGACACACTGAGACAGGTTGCCCAAGGAGGTTGTGGATGCCCTATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGTTCTGGGCAGCCTGGTCTGGTGGTTGGTGATCCTATACATAGCAGGGGGTTGAAACTCAATGATCTTTGTGGTCCTTTTCAACCCAGGCCATTCTCTGATTCTGTGATGTACAGTAGTGTGGGTCCTGCTTTGTGGGCCAGCTCTGCCTTGTCAGGTTAGGGAGTTTAGTGTTAGTGGCACTGGGAATTTGGCTGAGCTGTGGCCTCTCCTCTGTTGTGGGTGCTGGCTGGGGTCATGGTGCTCTGCCTGCAGAGTTGCCTGTGGCCATGCTCAGCAGGTCCTGCTGCATCTGCAG
Seq C2 exon
GTTCAGCGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(17.4=54.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]