HsaINT0111734 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140108656-140109143:+
Coord C1 exon
chr9:140108656-140108865
Coord A exon
chr9:140108866-140109021
Coord C2 exon
chr9:140109022-140109143
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TGGTGGCTTCTTCCACACAGCTT
3' ss Score
6.39
Exon sequences
Seq C1 exon
CCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCCAGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCTAGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACATCTTGGGCTCTGGCATCAG
Seq A exon
GTGGGGACTGCTGGGGACCGAGGAGGGCAAGGTGAGGTGGGCCGTGGGTCTGGGGTTCGGAGGAGGCTGGGCCGGGCTGCAGGGGATGACTTCTATCCGGGGCCCCGACATCCTCCCTGCGGCGTCCCCACAGCCCTGGTGGCTTCTTCCACACAG
Seq C2 exon
CTTTGCTGCTGGTGATGTGGTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTCCAGCGGTTCTGCCAGGTGCTGGGCCTGGACCCTGACCAGCTCTTCATGCTGCAGCCGCGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(3.7=7.0),PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTTCACCCTGCTGTTCC
R:
CGAGTTGGAGGGCTGAATCAG
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)