RnoINT0099546 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468814-2469413:-
Coord C1 exon
chr3:2469204-2469413
Coord A exon
chr3:2468936-2469203
Coord C2 exon
chr3:2468814-2468935
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGTGACTTTTTCATACAGTTT
3' ss Score
6.46
Exon sequences
Seq C1 exon
CTTGCCCTCCAAGTTCATCTTCCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTGAACCTCGCCAGTTCAGCCCCTCAGACACCCCCCTCAGAGTTACAGCCCTTTCTGGCTCCTGTGGTCACCAACCAGAGGGTCACTGGCCCCCAACACTTCCAGGACGTTCGGCTGATGGAGTTTGACATTACAGAGTCGAATATCAG
Seq A exon
GTAAGGAGCCAAAGCCCTCAGCAGTCAGGCAGGCTGCTCATGTGGCTGTCGGAAGCTGATGTGGTCAGGGAGAAGCTAGGCAGTAGGTAGGGCTTCAGAAAGGTACACCAAAGCTGTAGGCCAGGCAGCTCAGAGAGCTGGACCTCCAGCCCGCCCGCCTCTGTCTCCTTAGTCCCTTCATCTTCCCCCACAGTACACATCCCTCCATTCCCCAGCTCGTCTGTCCTTTCCACAGCAGCCCCACATTTCTGGTGACTTTTTCATACAG
Seq C2 exon
TTTTGCTGCTGGCGATGTTGTCTTAATTCTGCCCTCTAACTCGGAGGCCCACACCAAGCAGTTCTGCCAACTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGAGGTCCCCAGCATAG
R:
CTGGTTCCCGTGGCTTAAGTG
Band lengths:
303-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]