MmuINT0106859 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25249405-25250003:-
Coord C1 exon
chr2:25249794-25250003
Coord A exon
chr2:25249527-25249793
Coord C2 exon
chr2:25249405-25249526
Length
267 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGTGACTTTTTCATACAGCTT
3' ss Score
7.04
Exon sequences
Seq C1 exon
CTTGCCCTCCAAGTTCATCTTTCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTCAACATAGCCAGCTCAGCCCCTCAGACACCCCCATCAGAGTTACAGCCCTTCCTGGCACCTGTGATCACCAACCAGAGGGTCACTGGCCCCCAACACTTTCAGGATGTTCGGCTGATTGAATTTGACATTACAGACTCCAATATCAG
Seq A exon
GTAAGGAACCCAAGCCCTCAGGCAGTCAGGCAGGGTGCCCATATATTCCTAGGAAGCTGATGTGGTCAGGGAAAAGGTAGGCAGTAGTTAGGGCTTCACAAGGGTATGCCAGAGCCAAAGGCCAGGCAGTTCCGAGAGCTTGACCTCCAGCCCACCTCCATCTCCTTAGTACCTTCATTCTCCCCCACAGTACGCATCCCTTCTGTCCCCTCAGCTCCTCTGTCCTTTCTACACCATCCCCACATTTCTGGTGACTTTTTCATACAG
Seq C2 exon
CTTTGCTGCTGGTGATGTTGTATTCATTTTGCCCTCTAACTCGGAGGCCCACACCCAGCAGTTCTGCCAAGTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(17.1=28.2),PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGAGGTCCCCAGCATAG
R:
CTGGTTCCCGTGGCTTAAGTG
Band lengths:
303-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types