BtaALTA0019682-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105885152-105885475:-
Coord C1 exon
chr11:105885368-105885475
Coord A exon
chr11:105885246-105885266
Coord C2 exon
chr11:105885152-105885245
Length
21 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
GCCTACTGTCCCCTCCCCAGGCC
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTGCTGTGCGACTTCCCCCACACAGCTGCTGCTGTCCCCCCAGACTACCTGCTGGACCTGCTGCCCCTGATCCGGCCCCGGGCCTTCTCCATCGCCTCCTCTCTGCGG
Seq A exon
GCCCACCCCTCGCGGCTGCAG
Seq C2 exon
ATCCTGGTGGCCGTGGTGCAGTACCAGACCCGCCTCCGGGAGCCCCGCCGTGGCCTCTGCTCCAGCTGGCTGGCGTCCCTGGACCCTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-14-18,14-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(13.1=74.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACTACCTGCTGGACCTG
R:
GGAGGCGGGTCTGGTACTG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development