HsaALTA0005635-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140109547-140109973:+
Coord C1 exon
chr9:140109547-140109654
Coord A exon
chr9:140109859-140109879
Coord C2 exon
chr9:140109880-140109973
Length
21 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CACCCCGCCGTCCTCCCCAGACT
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCTCTGTGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGGCCTTCTCCATCGCCTCCTCGCTGCTG
Seq A exon
ACTCACCCCTCACGGCTGCAG
Seq C2 exon
ATCCTCGTGGCTGTAGTGCAGTTCCAGACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-8-11,8-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(15.8=100)
A:
NA
C2:
PF0066715=FAD_binding_1=PD(10.3=68.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCCCGACTACCTGTTG
R:
GCGAGTCTGGAACTGCACTAC
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)