BtaALTA0019685-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105888265-105891868:-
Coord C1 exon
chr11:105891791-105891868
Coord A exon
chr11:105888361-105888362
Coord C2 exon
chr11:105888265-105888360
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCGCCCCTCTCCTGCTGCAGAGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGAATCTGATTAATGAGCCCCTGGTGATATTTGTTTGTGCAACTACAGGCCAAGGAGACCCCCCGGACAACATGAAG
Seq A exon
AG
Seq C2 exon
TTTCTGGAGGTTCATCTTCCGGAGGAGCCTGCCATCCACTGCCCTCCGTCAGATGGACTTTGCTGTGCTGGGTCTCGGGGACTCGTCTTACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-2-6,2-5,2-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACAGGCCAAGGAGACCC
R:
CCAGCACAGCAAAGTCCATCT
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development