HsaALTA1052489-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137206232-137212599:+
Coord C1 exon
chr9:137206232-137206309
Coord A exon
chr9:137212502-137212528
Coord C2 exon
chr9:137212529-137212599
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGAGTTTCCTCCGGCTGTAGAAC
3' ss Score
4.45
Exon sequences
Seq C1 exon
GTGAATCTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTACAGGCCAAGGAGACCCCCCTGACAACATGAAG
Seq A exon
AACTTCTGGAGGTTTATATTCCGGAAG
Seq C2 exon
AACCTGCCCTCCACTGCCCTCTGTCAGATGGACTTTGCCGTCCTGGGCCTCGGGGACTCCTCATACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-1-6,1-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCAACTACAGGCCAAGG
R:
TTGGCGTATGAGGAGTCCCC
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains