BtaALTA0019894-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67011126-67019517:-
Coord C1 exon
chr3:67019329-67019517
Coord A exon
chr3:67011320-67011323
Coord C2 exon
chr3:67011126-67011319
Length
4 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
AAAAGAATTATTTTAAATAGGTA
3' ss Score
3.68
Exon sequences
Seq C1 exon
GTAAATGAAGAGGAGGAAAACCAAGACACAGAAAACATTTTTAAAGGGTACCGCCCTGGTAAACTCAAGCTCAGTTTTGAAGAAATAGAAAGACAAAGGAGAGAAGATGAAAAAAGGAAAGCAGAAGAAGATGCCAGAAGAAGAATAGAGGAAGAAAAGAAGGCATTCGCTGAAGCAAGGAGAAGCATG
Seq A exon
GTAG
Seq C2 exon
TAGATGATGACACCCCAGAGATGTATAAAACAATCTCTCAAGAATCTCTTATACCGGGAAAACTGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAGGAGCGGAAACATAAACTAGAGATGGAAAAACAGGAATTTGAACAACTGAGACAAGAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCAGAAGAAGATGCCA
R:
ACATCTCTGGGGTGTCATCATCT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development