GgaALTA0004696-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17821886-17826280:-
Coord C1 exon
chr8:17826095-17826280
Coord A exon
NA
Coord C2 exon
chr8:17821886-17822086
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
ACGATCTGCATTTCCAGCAGGTG
3' ss Score
7.09
Exon sequences
Seq C1 exon
ATAAATGAAGGTGGCCATGAAGAATCTGAAAATTCTGGTAGAGAATTCCGTCCTGGTAAACTTAGGCTCAGTTTTGAGGAGATGGAAAGACTGAGGAGAGAAGAGGAAAAGAGGAGAGCAGAACAAGATGCAAGAAGACGCATAGAAGAAGAGAGAAGGGCGTTTGCTGAAGCACGGAAGAACATG
Seq A exon
NA
Seq C2 exon
GTGCTGGATGATGATGAATCACCGGAAATGTTTAAAACATTTTCTCAAGAATCTCTCATCCCTGGTAAACTGGAAATTAATTTTGAGGAGATGCTGAGACAAAAGATGGAAGAAGAAAAGAGACGCACGGAAGAGGAGCGTAGGCAAAAGTTGGAAATGGAAAAGCAAGAATTCCAACAACTAAGACAAGAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945-11-16,11-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGCGTTTGCTGAAG
R:
CCAGTTTACCAGGGATGAGAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]