GgaEX0013093 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17811024-17828928:+
Coord C1 exon
chr8:17811024-17811169
Coord A exon
chr8:17814619-17814758
Coord C2 exon
chr8:17826955-17828928
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTTCATTTTCACACACAGTGC
3' ss Score
7.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
Seq A exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAGAATCAGGTCCTGAGATAGTTACTACCAGTAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCCATGTAGAAG
Seq C2 exon
ACATTTAATCATCACTGAAGAAAGGGAAGTGAGATAATTCATTATTTCTTATCTCCAGTAAACATTATCTGCTAAGAGAAACCCATTGTTTGCAAACTGCAACGAAGAACAAAAGAATGAACCGTCTTCAGAACATATCATGGAGTACCTCATTTGTTAATGGTGGAAATTGACTGGGAACTGTCAAGAGTATTAATACTCCAGCTATCTGCGGACTGCAAGCAAGCCTGGTATGTTGGGTAGACAGCTGAGGGAATTACAGAGGTCTTTTATTTGGAACTCATAAGGGAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAGAATTGAAGGAATTGAACTGCTGAACTCTTCCTTTAAGGAAACATTTTACTCCAAATTTTGACAACCACTGATACCAGATATAACCACATAGTCAGCCCTGTGGTCTTTTTCTACTTGTTCTTCTTTTGAATTTATAAATTCAATTGTCACACTTTTTTATTACTTGGTTAGTAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX2-3/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCCTCCAGCACCACAG
R:
ATACCAGGCTTGCTTGCAGTC
Band lengths:
255-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]