GgaALTA0004696-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17821886-17826280:-
Coord C1 exon
chr8:17826095-17826280
Coord A exon
chr8:17822087-17822089
Coord C2 exon
chr8:17821886-17822086
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CTAACGATCTGCATTTCCAGCAG
3' ss Score
5.43
Exon sequences
Seq C1 exon
ATAAATGAAGGTGGCCATGAAGAATCTGAAAATTCTGGTAGAGAATTCCGTCCTGGTAAACTTAGGCTCAGTTTTGAGGAGATGGAAAGACTGAGGAGAGAAGAGGAAAAGAGGAGAGCAGAACAAGATGCAAGAAGACGCATAGAAGAAGAGAGAAGGGCGTTTGCTGAAGCACGGAAGAACATG
Seq A exon
CAG
Seq C2 exon
GTGCTGGATGATGATGAATCACCGGAAATGTTTAAAACATTTTCTCAAGAATCTCTCATCCCTGGTAAACTGGAAATTAATTTTGAGGAGATGCTGAGACAAAAGATGGAAGAAGAAAAGAGACGCACGGAAGAGGAGCGTAGGCAAAAGTTGGAAATGGAAAAGCAAGAATTCCAACAACTAAGACAAGAAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGGCGTTTGCTGAAG
R:
CCAGTTTACCAGGGATGAGAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]