GgaEX1025664 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17811024-17828928:+
Coord C1 exon
chr8:17811024-17811169
Coord A exon
chr8:17816045-17816131
Coord C2 exon
chr8:17826955-17828928
Length
87 bp
Sequences
Splice sites
3' ss Seq
GAGAAAAGTGTTCTCTGCAGAAA
3' ss Score
3.74
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
Seq A exon
AAACTACCCGTGTGTAAAAAGAAGATTGGCTTTAAAAGGCAACTGTGATGGGAACAGTGTCTTAGGGAGATGCAGCTTGGACTTGAG
Seq C2 exon
ACATTTAATCATCACTGAAGAAAGGGAAGTGAGATAATTCATTATTTCTTATCTCCAGTAAACATTATCTGCTAAGAGAAACCCATTGTTTGCAAACTGCAACGAAGAACAAAAGAATGAACCGTCTTCAGAACATATCATGGAGTACCTCATTTGTTAATGGTGGAAATTGACTGGGAACTGTCAAGAGTATTAATACTCCAGCTATCTGCGGACTGCAAGCAAGCCTGGTATGTTGGGTAGACAGCTGAGGGAATTACAGAGGTCTTTTATTTGGAACTCATAAGGGAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAGAATTGAAGGAATTGAACTGCTGAACTCTTCCTTTAAGGAAACATTTTACTCCAAATTTTGACAACCACTGATACCAGATATAACCACATAGTCAGCCCTGTGGTCTTTTTCTACTTGTTCTTCTTTTGAATTTATAAATTCAATTGTCACACTTTTTTATTACTTGGTTAGTAAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX2-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTACTACAGGCAGCAG
R:
GCAGTTTGCAAACAATGGGTT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]