GgaINT1019610 @ galGal4
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17817585-17818065:-
Coord C1 exon
chr8:17817705-17818065
Coord A exon
chr8:17817599-17817704
Coord C2 exon
chr8:17817585-17817598
Length
106 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTAACCTTTTTATTTTCTAGCTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
AAAAGGGAAGAGGAAGAAGATGATGAGGGAAGTGTTATTAATGGTTCTACTTGTGAAGATGAGGAAGATCAAGCTCGATCTGGAGCTCCCTGGTTCAAGAAGTCACTGAAAAACACATCAGTTGTTGATGGTGAGCCAGTGAGATTTACAGTTAAAATTACTGGAGAACCAAAACCTCAAGTCACATGGTGGTTCGAGGGGGAAATGTTGCAGGACTCTGAGGACTATCAATATATTGAAAGAGGAGAAACCTATTGCCTTTATCTGCCCGAAACCTTCCCAGAAGATGAAGGTGAATATATGTGTAAAGCAGTCAACAACAGAGGCACATCTGCTAGCACCTGTATTCTCACCATTGAAA
Seq A exon
GTAAGAGTTAGTGTTTTCATTTGCTTAAGTCTCAAATGCTCTTCTTGTATCTTTCCTATTGCAAAAAATCTATTAATCTCTTTCTCTTAACCTTTTTATTTTCTAG
Seq C2 exon
CTGATGACTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=74.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]