RnoINT0100566 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257453546-257454003:-
Coord C1 exon
chr2:257453646-257454003
Coord A exon
chr2:257453560-257453645
Coord C2 exon
chr2:257453546-257453559
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCTTCTTCTTCTTTTTTTAGTGG
3' ss Score
10.06
Exon sequences
Seq C1 exon
AAAAGAGAAGATGATGAGGAAGAAGAAGGTAGCATTGTTAACGGCTCCACTACTGAAGACGAAGAGCAAACCAGATCAGGAGCCCCATGGTTCAAAAAGCCACTAAGAAATACCTCAGTTGTAGACAGTGAGCCAGTGAGATTCACTGTGAAAGTGACAGGAGAACCCAAGCCAGAAGTTACGTGGTGGTTTGAAGGAGAACTACTGCAGGATGGAGAAGACTATCAGTACATCGAAAGAGGAGAAACTTACTGCCTGTATTTACCAGAAACTTTCCCCGAAGATGGAGGAGAATATATGTGTAAAGCAGTCAACAGTAAAGGCTCAGCAGCGAGTACCTGTATTCTTACCATTGAAA
Seq A exon
GTAAGAACTAAATGGCTTTTGATCCTTTGTTTTATTATGAAATAAATAGGAAAAAATTATCATTCTTCTTCTTCTTCTTTTTTTAG
Seq C2 exon
TGGATGACTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]