GgaEX0013091 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17811024-17813738:+
Coord C1 exon
chr8:17811024-17811169
Coord A exon
chr8:17812725-17812817
Coord C2 exon
chr8:17813691-17813738
Length
93 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTGTTGAAGTGCAGGTT
3' ss Score
2.28
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
Seq A exon
GTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTTCCTTCAAGGAGCATTGCACT
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX2-1/4=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGCACCTGCTG
R:
ACCTAAGGTGGAAGGTCTGGG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]