HsaEX6031743 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77946482-77949300:-
Coord C1 exon
chr1:77949155-77949300
Coord A exon
chr1:77947453-77947547
Coord C2 exon
chr1:77946482-77946576
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTGTTGAAGTGCAGGTT
3' ss Score
2.28
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAGGCAGTTCCTGCTCCGACTGGGGCTCCTCCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTATTATAGACAACAAGCAGCCTATTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq A exon
GTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCACCAGGTAAGCACAACCTAAGGACATATATAAATAAATATTTCAATACATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613_MULTIEX1-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.583 C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCCAGATTATAGTGCAGC
R:
GGTTGTGCTTACCTGGTGCTT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains