HsaINT1013995 @ hg38
Intron Retention
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77946482-77947552:-
Coord C1 exon
chr1:77947453-77947552
Coord A exon
chr1:77946577-77947452
Coord C2 exon
chr1:77946482-77946576
Length
876 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CAATTATTTATACTTCACAGTGC
3' ss Score
5.69
Exon sequences
Seq C1 exon
TGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
Seq A exon
GTAAGTACATCAGAATGACAAATTGATGAACTGCAACAGTATCTTTTTGTCAATGTTCCACATAATGCAAATGCCATACGTTGTGTGAATATTATGTTGGAATACAGTGCTGATATCTTGGAAAACCATAACTGCCTCTTAATTTAACATAGAATAATACATAGTTCTGTATTTTTTTTAAAGTGAGCTTAATGGGTAAGTATTTTTTATATGCTTTAGCTATAGCTAAAGAAAACTGATACTTAACAAAGTTGAATAGTATTATTCACTGGTGCTCCTAAAATATTGTTTTTCAGTGTAAAATATGCATATCTTCTATATTTAATATGAAAGTCTTGAAATGTATCAGACAGAAGGGGATTTCAGTTTGCAAATAATGAGCAATGTAGCAATTTTAACACATTTCATAAATATATATTTTGTCATTGGTGGAGAGCACCATTTGTTGTTTTGAATATACTTTAAAGGAAGAGGTACAAGGACATAAATGTTGAGATTACCTACAGGATGGAAATAGCAGTACAGTTCATTGTAGATATTTTGAAATGTTTTTGATTGTTTTATATAACCTAGAGTGACTTCCCTTACCCTTATTTAGATCTGCATATATAGTTCTAGTATGAAGTTTAATAGTTAAGGAGTTAGCTATTTGTTATCTTTAAGAGTAGGGTATTGACGTGAACAATTGCAGTATTTTGCATGATACTGTTTTATAGATGACCTTTTAGGAAAGTGGTGCATTTATTAATTGAACTGAAGAAGTAGTTCAGTTGAATTCAGTATCATAATTCACAAATTGGAGGCTGTTGATTTTGATTCATTTAAGGTTTAAAATCTTTATTAATTGCAAACAGTGCAATTATTTATACTTCACAG
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCACCAGGTAAGCACAACCTAAGGACATATATAAATAAATATTTCAATACATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613:ENST00000294623:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains