HsaEX0026561 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77947453-77955282:-
Coord C1 exon
chr1:77955255-77955282
Coord A exon
chr1:77949155-77949300
Coord C2 exon
chr1:77947453-77947552
Length
146 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCTTTTTTTTCAAAGGTC
3' ss Score
7
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCTTGGGAAGAGTACTACAAGAAAATGG
Seq A exon
GTCAGGCAGTTCCTGCTCCGACTGGGGCTCCTCCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTATTATAGACAACAAGCAGCCTATTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq C2 exon
TGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'35-55,'35-48,40-55=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.780 C2=0.583
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(78.6=84.6)
A:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGGAAGAGTACTACAAGA
R:
AGTGCAATGCTCCTTGAAGGA
Band lengths:
128-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development