HsaALTA0003494-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77947453-77949267:-
Coord C1 exon
chr1:77949155-77949267
Coord A exon
chr1:77947548-77947552
Coord C2 exon
chr1:77947453-77947547
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTTGCCATTGTCTGTTGAAGTGC
3' ss Score
5.24
Exon sequences
Seq C1 exon
CAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTATTATAGACAACAAGCAGCCTATTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq A exon
TGCAG
Seq C2 exon
GTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-40-56,40-55-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCCCAGACAAGTCCCCA
R:
CAGTCCTCCTCACCCCTACAG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development