GgaEX6044507 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19606916-19612139:+
Coord C1 exon
chr8:19606916-19606990
Coord A exon
chr8:19611255-19611400
Coord C2 exon
chr8:19611782-19612139
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATAACCTGAATCACTTGTAGGTC
3' ss Score
7.06
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GAGATCAGCCAAACCCAGCACCAGCAGGGCAGGTTGACTACACAAAGGCATGGGAGGAATACTACAAAAAAATGG
Seq A exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
Seq C2 exon
GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAATACCTTTGTTAAATGTATGGATGCAGACGCCTTGATGAAGATCTTAATTTTGTTTGGTTTAAAAAAAAAAAAATAGTGTTTTTGAAAATGTACAAAATATCTATCACTACTGATAGGAGGTAATATTTCTGTGTAGAAATGAAAAATGGTTTGTTTTTAGTATTAGTGTAGATGTACACATTCCAGCAAATGTATTTGCAATTATGTGGTCAATGCTTTGTGATATAAATGTACTTTTTCAATGTATTCTTTATCACTTTTAAAATGCCTGTTTTGTGCTTTACAATAAATAATATGAAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'29-28,'29-27,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.796 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(75.9=84.6)
A:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACAAAGGCATGGGAGG
R:
ACAAACCATTTTTCATTTCTACACAG
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]