BtaEX6016936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66986096-66993523:+
Coord C1 exon
chr3:66986096-66986173
Coord A exon
chr3:66992613-66992758
Coord C2 exon
chr3:66993132-66993523
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGTTTTCTCAAAAGGTC
3' ss Score
10.44
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAGGAGATCAGCAGAATCCAGCTCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAGTACTACAAGAAAATGG
Seq A exon
GTCAAGCAGTTCCTGCTCCTACTGGTGCTCCACCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAACAAGCAGCCTACTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq C2 exon
GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAAAAACCTTTGTTAAATATATGGATGCAGACGGCTTGATGAAGATCTTAATTTTGTTTTTGGTTTAAATAGTGTTTTTCCTTTCTTTCTTTCTTCCTTTCTTTTTTCTTTTTTTTGAAAATGTACAAAATATCTATCACTACTGATAGGAGGTTAATATTTCTGTGTAGAAATGAAAATTGGTTTGTTTTTAGTATTTAGTGTAGATGTACACATTCCAGCAAATGTATTTGCAACTATTATGTGGTTAATGCTTTGTGATATAAATGTACTTTTTTCAATGTATACTTTCACTTTTAAAATGCCTGTTTTGTGCTTTACAATAAATGATATGAAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'25-32,'25-30,27-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.796 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(78.6=81.5)
A:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGGAAGAGTACTACAAGA
R:
CAAACCAATTTTCATTTCTACACAGA
Band lengths:
266-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]