DreEX6025614 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8859274-8865099:+
Coord C1 exon
chr2:8859274-8859333
Coord A exon
chr2:8861753-8861910
Coord C2 exon
chr2:8862191-8865099
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTATGATTCTCTCTTCTAAGGTC
3' ss Score
9.12
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTCAAGGCCAGCCTCAGCAGGACTACACCAAGGCGTGGGAAGAGTACTATAAGAAGCAAG
Seq A exon
GTCAAGCTGCTCCTCAAGCAGCTGCAGCAGCAACGGCAACACAGCCCGGAGGTCAGCCGGATTACAGTGCAGCGTGGGCCGAGTATTACCGCCAACAGGCCGCCTACTATGGTCAAGGAGCCCCTCAGGCAATGGGTGGTGCACCCCAGGCTCAGCAG
Seq C2 exon
GGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCAGAAAAAAACCTTTGTTAAATGTTTGGATGCAGACGCCATGATGAAGATCTTTATTTGATTGGTTTGAGTGTTTAAGATAGATCGCAGACCGGCTCCGAAGTCAAGTATAAATATATATATATTTTTCCCTTTTGTTTTGCCACTCTTGTAAATGAACGGTTTGTTTTTAGTCAGGTTAATATTTGGTCATTCCAGCTCCTGTATCTTCTGTATCTCATGTAGATTTGAGACTAAAGTCATTTCCATGTAAATCATCTCAGTTTTAATATGATATGCCTGTTGTGTTTTGCAATAAAACAATGAAACCTCCTGTGTTGGTAAGTGGGGTGCAAAGGTGGGGCATGTTTTGTGAACTTAACTTTGTTTTGGGACGGGGTGGGAGCAAATTTCCAAAAACGACAAATGTGTCTCTCGTTTTGTTTTTTTCTCTTCTTTGACCTGTCTATACAAGCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'19-23,'19-21,21-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.755 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=WD(100=62.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCAGGACTACACCAAGG
R:
ACCGTTCATTTACAAGAGTGGCA
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]