RnoEX6011943 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257445020-257449568:+
Coord C1 exon
chr2:257445020-257445094
Coord A exon
chr2:257447746-257447891
Coord C2 exon
chr2:257448275-257449568
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGTCCTCTGTTTTCCTGAAGGTC
3' ss Score
8.34
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GAGATCAGCAGAATCCAGCTCCAGCTGGACAAGTTGATTATACAAAGGCTTGGGAAGAGTACTACAAGAAAATGG
Seq A exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCAGATTACAGTGCAGCCTGGGCTGAATACTATAGACAGCAAGCAGCATACTATGCCCAGACCAGTCCCCAGGGAATGCCGCAGCATCCGCCAGCACCTCAG
Seq C2 exon
GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAAAACCTTTGTTAAATATATGGATGCAGACGACTTGATGAAGATCTTAATTTTGTTTTTGGTTTAAAGTAGTGTTTTTTTCCCCCCTCTTTTTTTTATTTTGAAAATGTACAAAATATCTATCACTACTGATAGGAGGTTAATATTTCTGTGTAGAAATGAAAATTGGTTTGTTTCAGTCTTTAGTGTAGATGTACACATTCCAGCAAATGTATTTGCAACTATTATGTGGTCGATGCTTTGTGATATAAATGTACTTTTTCAATGTATACTTTCACTTTTCAATGCCTGTTTTGTGCTTTACAATAAATGATATGAAACCTCCTGTGTCGGTAAGTTGGATATGTGGGTAACGGATGCATAGCTACTTAGCAGTGATGAATTAAGATCCATGTACACAATATAAGCTTTTCCCCATGAATTACCGAGTTTTTAAACACTGGCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'24-30,'24-28,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.776 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(75.9=84.6)
A:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGCTTGGGAAGAGTACT
R:
CAAACCAATTTTCATTTCTACACAGA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]