MmuEX6074740 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152228171-152236826:+
Coord C1 exon
chr3:152228171-152228245
Coord A exon
chr3:152231877-152232022
Coord C2 exon
chr3:152232395-152236826
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGTTCTCTGTTTTCCTGAAGGTC
3' ss Score
8.05
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGG
Seq A exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCGGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAGCAAGCAGCGTATTATGCCCAGACAAGTCCCCAGGGGATGCCGCAGCATCCTCCAGCACCTCAG
Seq C2 exon
GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAAAACCTTTGTTAAATATATGGATGCAGACGACTTGATGAAGATCTTAATTTTGTTTTTGGTTTAAAGTAGTGTTTTTTTCCCCCCCTTTTTTTTTATTTTGAAAATGTACAAAATAACTATCACTACTGATAGGAGGTTAATATTTCTGTGTAGAAATGAAAATTGGTTTGTTTTTAGTCTTTAGTGTAGATGTACACATTCCAGCAAATGTATTTGCAACTATTATGTGGTCGATGCTTTGTGATATAAATGTACTTTTTCAATGTATACTTTCACTTTTAAAATGCCTGTTTTGTGCTTTACAATAAATGATATGAAACCTCCTGTGTCGGTAAGTTGGATATGTGGGTAAAGGATTCATAGTTTCTTAGCAGTGATAAATTAAGATACATGTACACGAATATATAAGCTTTCCCCATGAATTACTGAGTTTTTAAACACTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'42-49,'42-47,46-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.646 C2=0.278
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(75.9=84.6)
A:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGCTTGGGAAGAATACT
R:
CAAACCAATTTTCATTTCTACACAGA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types