MmuEX0019728 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152231877-152234570:+
Coord C1 exon
chr3:152231877-152232022
Coord A exon
chr3:152233603-152233702
Coord C2 exon
chr3:152234524-152234570
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTTGCCATTGTCTGTTGAAGTGC
3' ss Score
5.24
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCGGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAGCAAGCAGCGTATTATGCCCAGACAAGTCCCCAGGGGATGCCGCAGCATCCTCCAGCACCTCAG
Seq A exon
TGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=0.615 C2=0.380
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000200056fB1734
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGCTCCTGCTG
R:
TTTGCAGCAGAACCTAAGGTGG
Band lengths:
178-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types