GgaEX0013091 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19611255-19613969:+
Coord C1 exon
chr8:19611255-19611400
Coord A exon
chr8:19612951-19613048
Coord C2 exon
chr8:19613922-19613969
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTGCCATTGTCTGTTGAAGTGC
3' ss Score
5.24
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
Seq A exon
TGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTTCCTTCAAGGAGCATTGCACT
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX2-1/2=C1-2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGCACCTGCTG
R:
ACCTAAGGTGGAAGGTCTGGG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]