RnoEX0037092 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257447746-257450445:+
Coord C1 exon
chr2:257447746-257447891
Coord A exon
chr2:257448275-257449570
Coord C2 exon
chr2:257450399-257450445
Length
1296 bp
Sequences
Splice sites
3' ss Seq
TATGTATCTCTTCTGCACAGGGC
3' ss Score
8.31
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCAGATTACAGTGCAGCCTGGGCTGAATACTATAGACAGCAAGCAGCATACTATGCCCAGACCAGTCCCCAGGGAATGCCGCAGCATCCGCCAGCACCTCAG
Seq A exon
GGCCAATAATAAGAAGTGGACAATACAGTATTTGCTTCATTGTGTGGGGGAAAAAACCTTTGTTAAATATATGGATGCAGACGACTTGATGAAGATCTTAATTTTGTTTTTGGTTTAAAGTAGTGTTTTTTTCCCCCCTCTTTTTTTTATTTTGAAAATGTACAAAATATCTATCACTACTGATAGGAGGTTAATATTTCTGTGTAGAAATGAAAATTGGTTTGTTTCAGTCTTTAGTGTAGATGTACACATTCCAGCAAATGTATTTGCAACTATTATGTGGTCGATGCTTTGTGATATAAATGTACTTTTTCAATGTATACTTTCACTTTTCAATGCCTGTTTTGTGCTTTACAATAAATGATATGAAACCTCCTGTGTCGGTAAGTTGGATATGTGGGTAACGGATGCATAGCTACTTAGCAGTGATGAATTAAGATCCATGTACACAATATAAGCTTTTCCCCATGAATTACCGAGTTTTTAAACACTGGCATGTTTTTCCCCGTTGGAGTATAGTGGTAGATTGGAGGTTCTTTTCTGTTGTATTTGGCTATTTCAGCACAAGTAATCTTGATATCTTCATTTTTTTCCTTCTATTTGATTAAAAAGCTGCATGTGTATACGATGATCTTTAGTATCGTCCATTGCATTAACAGTGAAATTTCCTTTTATACATGAGCACTGTTTCAGACCTGTACTGCTGCTACAACAGCTAACCTTCCTGTTCTTCACTTACTGCCAAGACTGTTTCAGCATAACTAATTTTGAACAGTTTTCAGACAGTGATTTGAGGAGTTTATAAGAAACATTGTTTTTCCATGTAAAGCAACTCTTTCAATGTATATATCTATATAATAGTGTGTTTCTTTTTAAATTCAGGATAGAAAAGTAATAGAATGCGAAAGTATAGCTACATTGCACCTGCCATTGAAACATTTGGGGTATGAAAATGTTCAAGCTTTTTTTTTCTTTTTGCAGTATAGATAAGCTTTGTCTTGTAATTGCACAAGTCCAGTCATTGAATCAAATTAATTTTTTATGTACTTGAATCATTTTATTAATCTTTAACATTCATGCTGAAGTTGATATTTTGTTGAAAACCATTGTTTTACTCTGCATATTTGTTGGCTCTTTGCATATTAATATATTAGACTACATGCAAATACAGTCTGTCTTGCCATTGTCTGTTGAAGTGCAGGTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
Seq C2 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGCTCCTGCTG
R:
GCTTTTTGCAGCAGAACCTAAGG
Band lengths:
182-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]