MmuEX7002224 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152231877-152236826:+
Coord C1 exon
chr3:152231877-152234570
Coord A exon
chr3:152235468-152235604
Coord C2 exon
chr3:152236607-152236826
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCCTTCATTTTCACACACAGTGC
3' ss Score
7.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTTAACGCCTTTTCATTAAATGTTAGTTCTATCATCTGTGGGGAGCACCATTTGTATGAGGACAAAAATGTTGAGGTTATAGGGCAGAAAATAGTACAGCTCATTGTGGATGTTTTGAAATGTTTTTTGATTGTTTTATGTAACTTAGTGACTTCCCTTCCCCTTATTTAGATCTGGATGCATAGCTCTAGTATGAAGTTTAATAGTAATAGTTAAGGCCTTACCTGTTAAGATCTTAAGTGTAGGGTATTGACATGAACAGTTTCAGTATTTTGCATGATATTGTTGCATAGATGACCTAGGAAAGTGTTGTGGTGCATTTAGTAATTAAACTGAAGGAAATAGTTGGATTCAGTATCATAATTCACAAATTGGAGGCTGTTGATTTTGATTCGTTTAAAATTTAAAATCTTTATTAATTGCAAACAGTGCAATTATTTATACTTCACAGTGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCAACAG
Seq A exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAAAATCAGGTCCTGAGATAGTTACCCATAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCAATGTAGAAG
Seq C2 exon
AAACTACCCGTGTGTTAAAAGAAGATTGGCTTAAAATGGCTACTGTGATGGGAACAGTGTCTTAGGGAGATGCAGCTTGGACTTGAGGTAAATTGAATACTTTACAAACTGGCTTAGAGTTTTGCTTTAATGTCATTATATGTAAAAGGGCACATGATTATTGTAATTTTGTATTCTTTATGGTTTCCTTAATTAAAATAATAAATGTACAGTGATTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'46-53,'46-52,55-53=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGAAAGTGTTGTGGTGCA
R:
CTGTTCCCATCACAGTAGCCA
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types