RnoEX0037093 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257450399-257453741:+
Coord C1 exon
chr2:257450399-257450445
Coord A exon
chr2:257451306-257451442
Coord C2 exon
chr2:257452527-257453741
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCCTTCATTTCCACACACAGTGC
3' ss Score
6.9
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAGCAACAG
Seq A exon
TGCTGAAGATGCTGCAAGCACCAAAGCTAGCATAAGATCAGGCCCTGAGGTAGTTCCCTAAGAGGAAGGAAGGAGCCTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCGTAGAAGGGCTCAATGTAGAAG
Seq C2 exon
AAACTACCCGTGTGTTAACAGAAGATTGGCTTAAATGGCTACTGTGATGGGAACAGTGTCTTAGGGAGATGCAGCTTGGACTTGAGGTAAATTGAATACTTTACAAACTGGCTTAGAGTTTTTGCTTTCATGACATTGTATGTAAAGGGTACATGACTGTTGTAATTTTGTATTCTTTATGGTTTCTTTAATTAAATAAATGTACAGTGATTACTATTATGAGTGCTTTTGTCTTTTTGTGTCTTTGATATATATTCTGAGTAAAAATTTTCCTGCTTTGTTCCTGTCATTAAAAATTTAATGTGAGAAAAGTAATTTTTTTATTTTGCCTTTTTAATTATAAGTGCATTAAACGTTTAAAAGAGCAGATAATTACACCAATTGCACAGTTTTTAAAATAAAAGAAAGACTTTTTAATGCACAGGTAACTTTATTATGGTTTCACAACACGTTTTCCAGAAAATTAAATATAAAACCACCCAATATTAGAACATAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGCTGCAAAAAGC
R:
ACACAAAAAGACAAAAGCACTCA
Band lengths:
266-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]