GgaEX0013093 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19613922-19616376:+
Coord C1 exon
chr8:19613922-19613969
Coord A exon
chr8:19614850-19614989
Coord C2 exon
chr8:19616276-19616376
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCTTCATTTTCACACACAGTGC
3' ss Score
7.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TGCCTTCCCAGACCTTCCACCTTAGGTTCTGCTGCAAAAAAGCAACAG
Seq A exon
TGCTGAAGATGCTGCAAGCACCAAATCATAGCTCATAGAATCAGGTCCTGAGATAGTTACTACCAGTAAAGAGGAATCCTTTGAGTGTATGCCATTGGTGAGCCGATGAGCATGGACCATAGAAGGGCTCCATGTAGAAG
Seq C2 exon
AAACTACCCGTGTGTAAAAAGAAGATTGGCTTTAAAAGGCAACTGTGATGGGAACAGTGTCTTAGGGAGATGCAGCTTGGACTTGAGGTAAATTGAATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'33-32,'33-31,34-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGACCTTCCACCTT
R:
AGCATTCAATTTACCTCAAGTCCA
Band lengths:
147-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]