BtaALTA0020217-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27322329-27323481:-
Coord C1 exon
chr2:27323356-27323481
Coord A exon
chr2:27322441-27322443
Coord C2 exon
chr2:27322329-27322440
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TCCCCCCCCTATTCAAACAGCAG
3' ss Score
7.19
Exon sequences
Seq C1 exon
AATAGCTTGAAACTAGACCTTCTGCAAGCAAACTCCTATAAACTGTCATCTGTGTTAGCAGAACTTGAGCAAAGACCTCAACCCAACCATCCCTGTAGTAACTCCATCTTCAAGTGGAAAGAAAAG
Seq A exon
CAG
Seq C2 exon
CAGACACACAGTTCTGTAAAAATATCTCGGCCTGTTCTGATGAAGAGATTAGAGAATGTTGTGAACAGGGCATCTTCTGATGGGCAGAGAATTCCAAGTCCTTCGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362-23-24,23-23,23-22-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGACCTCAACCCAACCA
R:
TCTTCATCAGAACAGGCCGAGA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development