BtaINT0102823 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27322329-27323481:-
Coord C1 exon
chr2:27323356-27323481
Coord A exon
chr2:27322441-27323355
Coord C2 exon
chr2:27322329-27322440
Length
915 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCCCCCTATTCAAACAGCAGCAG
3' ss Score
1.13
Exon sequences
Seq C1 exon
AATAGCTTGAAACTAGACCTTCTGCAAGCAAACTCCTATAAACTGTCATCTGTGTTAGCAGAACTTGAGCAAAGACCTCAACCCAACCATCCCTGTAGTAACTCCATCTTCAAGTGGAAAGAAAAG
Seq A exon
GTAAACATTTAAGAGGCTGGTTATAATTTCTTGACTGGCCTTGTTGGGTAGAATGATTCAAAGAAGCATCAGGGCAAAAAAGCTGTTATGAATTATATATGCCAATTATAAATGCTCAAATCTCCAATTGCACAATTTTAAGATAAATTTAATTATTTTTTGAGCACAGTAACAAAGACTAAACACAAATGAACAAATTCTTTGTATTCATAGGTAAATTAATGAGTTAAAAATACTTTGGGTTCCTTCTTCCTTCTCATTTTCTAACTTTATCCTTTGAACGTGCTCTTAGAGTAAAATTTCTATTACATTCCTAAATTGTAAGATTTTGTGATAAGCAGTAGTCTCATCCATTTAACATAGTACATGATGTTGATAATGTGTGAGCACAATTAAAAGGTTCACACACATGTATTAATGCTTTCCCGGTGTTTCACTCTAGGTGTTGATGAGCACGTGAGTATACACGGTTAGCTGTTTTCCATTTGCTACCAGAAGAGGGAGCTGTAACTACCTTGTGATGAAGGGACAGTTTTCTTTTTGAGCCTTGAGCTCTAAAGGGGTCTCAGTCATTTACACAGAGTCATGATTATTTCACTTGCATCAAAACCAATTAAAGTTGAATTTGTAGAAGGAATGGTGTAAATGTTATTATTTGGCTTAAGGCTGCAGGTCAGAATTGCAAACACAGGCTATAAAAGATAGTAATGTCTAATTCTGAAAATATCAAGGTTTCAGTAACAAAACCTCACTATAGTAGGATTTAGAAATGTATTGAATGATTTCTTTACATCCTTCTCCCAATAATTAAAAAACAGATTCCTGAGGAAAACAGTTGCAGAAGAGTTACTTTTCTCAAATACTTTTGTTGATAGCGCTGTTAAAAATGTCTTCCCCCCCCTATTCAAACAGCAG
Seq C2 exon
CAGACACACAGTTCTGTAAAAATATCTCGGCCTGTTCTGATGAAGAGATTAGAGAATGTTGTGAACAGGGCATCTTCTGATGGGCAGAGAATTCCAAGTCCTTCGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCTTGAAACTAGACCTTCTGCA
R:
CTGTAGACGAAGGACTTGGAA
Band lengths:
238-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]