RnoINT0102191 @ rn6
Intron Retention
Gene
ENSRNOG00000006611 | Nostrin
Description
nitric oxide synthase trafficking [Source:RGD Symbol;Acc:727920]
Coordinates
chr3:55427259-55428733:+
Coord C1 exon
chr3:55427259-55427384
Coord A exon
chr3:55427385-55428618
Coord C2 exon
chr3:55428619-55428733
Length
1234 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
ACTAAAACCTATTTGAACAGGAG
3' ss Score
3.98
Exon sequences
Seq C1 exon
AACAGCTTGAAACTAGACCTTTTGCAAGCGAACTCCTACAAGCTGTCGACGGTGTTGGCAGACCTGGAGCAACGGCCAAAGCCCTGTCATCCGTGCAGCAACTGCATTTTCAAGTGGAAGGAAAAG
Seq A exon
GTAACGAGATCGATCGGGTGGGACATGCTGGGATGCGCCTGTGCAGTGGAAGGGCCTAAAAGAATGTCAAGCCAGCAATGTGCGCCATATTTAAGCCCCAGGTTCTTACTGCAGCTATTAAGATAAATTTACCTTTATTCCTTTTGAGCACGACAAAAGGCTGAAAACAACAGAACACATCCTTTGGAACAAGACTAAATCACTCAACTGAGAAAAAGCTTAGGGTTTCTTCTCTCTCTCCACACCTTAACTTCAGCTTCACAGTGTGCTGCTGTAGAAATTTCTGCTGACTTGAAATTTGGGTATTTCTGCAGACCTAAACTATAAGATCTTATGCATCGGGTTCACCTTAGCACAGTGGAAATGCACGCCCGGGTGCACAGTCTATGTGATGTGGATAATAGGAGTACAATTTTAAAGCCCACCACAAACACAGGTTGTCTGTGAAGGGCTACACACACTCTGGAAATTGTCGGTAGACAGTTATTGCTTGTAGATAGTTTCGTTACTGTTCAGAAGAGGGGTCTGTAAGCAAACATTCAGTAATGAAGGGACGATATTCTTTCTGAAGTGGTCTCCATCATTTTACTGGGGCCTGTCTTAGGGTTTTATTGCTGTGAACAGACACCATGACCAAGGCAACTCCTATAAGGACAACATTTATTTAGAGCTGGCTTACAGGTTCGGAGGTTCAGTCAGAACATGGCAACATCCAGGCAGGGATGGTACAGGAGGAGCTGAGAGTTCTACATCGTCATCTGAAGGCTGCTAGAAGAATACTCGCTTCCAGGCAGCTAGGATGAAGGTCTTAAAGCCCCACCCACAGTGCCACGCCCACTCCAAAAAAGACCACACCTACTCAAACAGGGCCACACCTTCTAATAGTACCACTCCCTGGGCCGAGAGCATTTACAGACCATCACAGAGGTCCATTAAACTTGGATTTCAAAAATATCGCTACAAATGTTTCTATTAGGCCCAGGCATTCAGGTCCAAATAGGAAGCGTGGACATGAATTATGATAATCGTCTCATCCTGAAAATATTTTGCCTTTGGAGCAAGAAGACTTAAACACAGAAGGTTTTAGAAATGTTTTGATTATGTCTGCATCATCCCTATTAAAAAACGCGCACACAAATTCCAAGGAAACGACATACAGAAAACAATGTCTCATGAATATTTATAACACGGTCGTTTAGAATTACTTTCTTTTTACTAAAACCTATTTGAACAG
Seq C2 exon
GAGCACTCTCATTCTTACGTGAAAATATCCCGGCCTCTTTTGACGAAGAGATTAGAGAAAGCTGAGAGCAAGGCCCCCGCGGGTGAGCAGAACAACCCGAGCTCTTCACGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006611:ENSRNOT00000067161:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCTTGAAACTAGACCTTTTGC
R:
GACGTGAAGAGCTCGGGTTG
Band lengths:
238-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]