HsaINT0114795 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169716022-169717419:+
Coord C1 exon
chr2:169716022-169716147
Coord A exon
chr2:169716148-169717304
Coord C2 exon
chr2:169717305-169717419
Length
1157 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTTTATGTCATTTGAACAGGAG
3' ss Score
8.17
Exon sequences
Seq C1 exon
AACAATTTGAAACTAGACCTTTTGGAAGCGAACTCCTACAAACTGTCATCAATGTTAGCAGAACTTGAGCAAAGACCTCAACCCAGCCATCCTTGTAGTAATTCCATCTTCAGGTGGAGGGAAAAG
Seq A exon
GTAACATTTAAGGAGACTGGTTGTAATTTCTTGATTGGGCCTGCTGGGTGGAGTGGCTTAAAGTAGCATCAGGGCAAAAAAGGTGTTAGGAATTCTATGTGATATTAATATTCATGCAGTTAGTTAAGAAGATAAATGTTTTTATTTTTCTTTTGAGCACAATAACAAGAGCTAGACAAAACCGAATACATTCTGTGTACACCAAACTTCTATGAGAAGCTAAAAAACACTTTTGATTTCTTCTTTCTCATCATACCTGAATTTCATCCTTTGGATGTGCTTTTACAGTAAAATTTCTATTAAATTGAAATTTTAATATTCGTTCAGACCTAAATTATAAGATTTTGTGGTATGTATTAGTCTCATCTGTTTAAGATGGTGCCTAATGCAGATAATGCATCAGTACAGCTCTGAAATGCTTGTAGCTATTTTTATTACTGATCAGAAGGGGGAACTGTAATCATCTTGTGAAGGGACAGTTTTCTAAGGCTCAAGAGCTCGAAAACAATCTCAATCATTTACAGGGTTGTGATCATTTCACTTGCATTAAGCCAACTAAAGTTGTATTTGTAAAAGTAATGCTATGAATATTACTATTTGACCTAGACACATAGGTTAGAATTGGAAACACAGGCTATAAAGTATAGTAATTGTGTAATTGTGAAAATATTAAGGCTTCAACTCAAAACTGAAACACAGTAGGGCTTAGAAATCTTTGAATTATTTATACCCCTCAGTTTAAAAACTTCCAGTCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGAACTTTGGGAGGCCAAGGCAGGCGGATCACCTGAGGTCAGGAGTTCGAGAGCAGCCTGGCTGACACGGTGAAACCCCGTCTCTACTAAGAATACAAAAATTAGCCAGGCATGGTGGTGGGCACCTGTAATCCCAGCTACGGGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGTAGTGGGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGACAGGGCAAGACTCTGTCTAAAAAAAAAAAAGAAAAAACAAACAGAAAAAACAACTTGAGGAAAACAGCTACAGAAGAGTTAATTTTCATGAATGTTTATGATAATCGTGTTACAAAATATGACTTTTTATGTCATTTGAACAG
Seq C2 exon
GAGCATACTCATAGCTATGTGAAAATATCTCGGCCTTTTTTAATGAAGAGATTAGAGAATATTGTGAGCAAGGCATCTTCTGGTGGGCAGAGCAATCCAGGTTCTTCAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001171631:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTTGAAACTAGACCTTTTGGA
R:
TGGAGTTGAAGAACCTGGATTGC
Band lengths:
239-1396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)