MmuINT0109717 @ mm10
Intron Retention
Gene
ENSMUSG00000034738 | Nostrin
Description
nitric oxide synthase trafficker [Source:MGI Symbol;Acc:MGI:3606242]
Coordinates
chr2:69182827-69183995:+
Coord C1 exon
chr2:69182827-69182952
Coord A exon
chr2:69182953-69183880
Coord C2 exon
chr2:69183881-69183995
Length
928 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
ATAAAAACCTACTTGAACAGGAG
3' ss Score
3.71
Exon sequences
Seq C1 exon
AACAGTTTGAAACTAGACCTTTTGCAAGCGAACTCCTACAAACTGTCGTCAGTGTTGGCAGACCTGGAGCAACGGCCAAAGCCCTGCCATCCCTGTAGCACCTGCATTTTCAAGTGGAAAGAAAAG
Seq A exon
GTAACGTGACGGTGAGATCAGTTGGGATGTGTTGGAACGCACTTGAGAAGCAGAAGGGTTTAAAAGAACATCAAGGCAGAAATCCGTGTCATATTTAAGCCCCAGGTTCTTACTGCAGCCATTAAGACAAATTTTACTTTTATTCCTTTTGAGCAACAACTTGAAACACAACAGAACACATCCTTTGGAAGGAGACTAAATCACTTGGCTGAAAACAATCCTTATGATTTCTCCTCTCTCTCTTCATACCTTAACTTCAGCTTTACAGGGTGCCGCTGGTAGAAATTTCTACTAATTTGAAATTTGGGTATCCCTGCAGACCTAAACTGTAAGATTCTTTTGCATCAGGTTCATCTTAGCACAGTGGAAATGCATCCCTCAGTGCACAGACTAACACAGTATGCAATGTGGATAGTAGGAGTACATTTTAAAGCCCACCTCAAACACAGATGCCTGTGCTACACTCTGGAAATTGTCCATAGACAATTATTGCTTGTAGCTAGTTTCATTACTGGTCAGAAGGGGGTGGGGCTGTAAGCAAACATCCACTGATGAAGGGACAGCATTCTTTCCAAAGAGAGCCATAAGCTCTAAAAGGGTCTCTATCATTTTATAGGGGGTCCATTAAACTTGGACTTCCAAAACATTGCTACAAATGTCTCTATTAGGTCCAGGCATATGGGTCCAAATAGGAAACATGGACTAAGAAATATAATAATCATCTTATTCTGAAAATATTTTCCCTTTGGAACAAGAAAACGTAAACACAGAAGGTCTTAGAAATGTTTTGATTATGTAGGCACCATCCCTATTAAAACACACGCACACAAATCCCAAGGAAATGGCATACAGAAAACAATGTCTCATGAATATTTATAACACAGTTGTTTAAAATTACCTTCTTTTTTATAAAAACCTACTTGAACAG
Seq C2 exon
GAGCACTCTCATACTTATGTGAAAATATCCCGGCCTCTTTTGACGAAGAGATTAGAGAAAGCTGAGAGCAAAGCACCTGCGGGTGGGCAGAACAATCCAAGCTCTTCACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034738:ENSMUST00000041865:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAAACTAGACCTTTTGCAAGC
R:
CTGAAGGTGAAGAGCTTGGATTGT
Band lengths:
238-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types