BtaALTA0020364-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018007 | NR2F2
Description
Bos taurus nuclear receptor subfamily 2, group F, member 2 (NR2F2), mRNA. [Source:RefSeq mRNA;Acc:NM_174402]
Coordinates
chr21:10797318-10800183:-
Coord C1 exon
chr21:10799457-10800183
Coord A exon
chr21:10797577-10797845
Coord C2 exon
chr21:10797318-10797576
Length
269 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCCG
3' ss Score
12.15
Exon sequences
Seq C1 exon
GAGCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACGGCAGCCGGCGGCCAGGGCGGCCCTGGCGGGCCGGGTAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAAGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
CCGTGCAGAGGGGCAGGATGCCGCCCACCCAGCCGAGCCACGGGCAGTTCGCGCTGACCAACGGGGACCCCCTCAACTGCCACTCCTACCTATCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATTTGCGAACTGGCCGCGCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAG
Seq C2 exon
ATCACCGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAGCTGTTCGTTCTGAACGCGGCCCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTCCACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTAAAAGCGCTGCACGTCGACTCCGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018007-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTACTGCCGCCTCAAAAA
R:
AGGTGAACAGGACTATGGCCT
Band lengths:
306-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development