DreALTA0018775-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000040926 | nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
Coordinates
chr18:23886923-23888838:-
Coord C1 exon
chr18:23888050-23888838
Coord A exon
NA
Coord C2 exon
chr18:23886923-23886975
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
AGTTTCTCTTTTTACTGCAGCCG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GAACAAAAAGTTTTTTTAACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACCCATGGCACCCTCTCATCGCAAACCCAAGGAGGACTATCCCTTCCGACCCCTCAACCAGGCCAGCTGGGTCTGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCCCGAACAACAATAACAACACACAGTCAACCCCGACGAACCAGACGACGCAGAGCCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGTAAACACTATGGCCAGTTCACTTGCGAGGGGTGCAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAG
Seq A exon
NA
Seq C2 exon
CCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040926-7-12,7-11,7-10-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=44.9)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCAGCACCATCGCAAT
R:
CTGTGTGGGTGGCATTCGTC
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]