DreEX0051437 @ danRer10
Exon Skipping
Gene
ENSDARG00000040926 | nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
Coordinates
chr18:23886448-23984243:-
Coord C1 exon
chr18:23984133-23984243
Coord A exon
chr18:23901590-23901776
Coord C2 exon
chr18:23886448-23886975
Length
187 bp
Sequences
Splice sites
3' ss Seq
TTTCACACTTATTTCTTCAGGGC
3' ss Score
9.42
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
ATGAGCATCTTGAGAAATGTTCAGCTCAGAGTCAAATCGGCTGACGTTTTAAAGCTCAAAAGAAGAAAAAAGAAGAAGCTGGATCTCTTTAAGACATGGTCACAAGATCAG
Seq A exon
GGCAGGAGGAAGCTGACTAGGGCTATGTTGTTGGGACCAAACAGCCCTTAATGGAGGTGACAAAACAAATGTCCTTAGAGAAAACCTCAAGAGCCAGTTACATGAGCACTTCAGGGCCTGCAGCTGAAGTTTACCCGGACACCGCGTCTTTCAGGGGGCTCGCATAAACATTACACTCTCTGTCTGG
Seq C2 exon
CCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTACTACGAGCGGAGCCCTACCCAACTTCTCGGTATGGCAGTCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGTGAACTGGCAGCCAGGATGCTGTTTAGTGCGGTAGAGTGGGCCAGGAATATTCCCTTCTTCCCAGACCTCCAAATCACCGACCAGGTTGCCCTTTTGAGGTTGACCTGGAGTGAGTTGTTTGTGCTTAACGCTGCTCAATGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGGCTCCATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTAGAAAAGCTCAAAGCTTTGCACGTTGACTCTGCTGAATACAGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040926_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.081
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCAGAGTCAAATCGGC
R:
CTGCCATACCGAGAAGTTGGG
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]