DreEX0051436 @ danRer10
Exon Skipping
Gene
ENSDARG00000040926 | nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
Coordinates
chr18:23901590-23984243:-
Coord C1 exon
chr18:23984133-23984243
Coord A exon
chr18:23946599-23946671
Coord C2 exon
chr18:23901590-23901776
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCTTGTCTTTTCTAGGAC
3' ss Score
11.43
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGAGCATCTTGAGAAATGTTCAGCTCAGAGTCAAATCGGCTGACGTTTTAAAGCTCAAAAGAAGAAAAAAGAAGAAGCTGGATCTCTTTAAGACATGGTCACAAGATCAG
Seq A exon
GACACTAGCAAATATAACTATGTCAGGACGCCTCACAGCTATATATTACCCAGCTCAGCGAGAGAGACAAAGG
Seq C2 exon
GGCAGGAGGAAGCTGACTAGGGCTATGTTGTTGGGACCAAACAGCCCTTAATGGAGGTGACAAAACAAATGTCCTTAGAGAAAACCTCAAGAGCCAGTTACATGAGCACTTCAGGGCCTGCAGCTGAAGTTTACCCGGACACCGCGTCTTTCAGGGGGCTCGCATAAACATTACACTCTCTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040926_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTCAAATCGGCTGACGT
R:
ACTGGCTCTTGAGGTTTTCTCT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]