BtaALTA0020510-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003183 | NTN4
Description
Bos taurus netrin 4 (NTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001102203]
Coordinates
chr5:60390230-60390922:-
Coord C1 exon
chr5:60390709-60390922
Coord A exon
NA
Coord C2 exon
chr5:60390230-60390342
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
GTTTTCTATTTTATTAGCAGCAC
3' ss Score
4.89
Exon sequences
Seq C1 exon
CGTGTTCCTGTCATCCAGTTGGATCAGCTGTCCTTCCTTTCAGCTCGGTGACCTTCTGTGACCCCAGCAATGGTGACTGCCCGTGCAAGCCTGGGGTGGCAGGGCCACATTGTGAGAGGTGTATGGTGGGGTACTGGGGCTTCGGAGACTACGGCTGCCGGCCTTGTGACTGTGCGGGGAGCTGCGACCCTCATACAGGAGACTGCCTCAGCAG
Seq A exon
NA
Seq C2 exon
CACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCATTCCATGCACAATAAGAGTGAGCCAACCTGGGATTGGAAGGATGAGCAAGGATTTTCTGCACTTCGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003183-8-9,8-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=79.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGACCCTCATACAGG
R:
ATCCCAGGTTGGCTCACTCTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development