BtaALTA0020510-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003183 | NTN4
Description
Bos taurus netrin 4 (NTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001102203]
Coordinates
chr5:60390230-60390922:-
Coord C1 exon
chr5:60390709-60390922
Coord A exon
chr5:60390343-60390345
Coord C2 exon
chr5:60390230-60390342
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATCGTTTTCTATTTTATTAGCAG
3' ss Score
3.97
Exon sequences
Seq C1 exon
CGTGTTCCTGTCATCCAGTTGGATCAGCTGTCCTTCCTTTCAGCTCGGTGACCTTCTGTGACCCCAGCAATGGTGACTGCCCGTGCAAGCCTGGGGTGGCAGGGCCACATTGTGAGAGGTGTATGGTGGGGTACTGGGGCTTCGGAGACTACGGCTGCCGGCCTTGTGACTGTGCGGGGAGCTGCGACCCTCATACAGGAGACTGCCTCAGCAG
Seq A exon
CAG
Seq C2 exon
CACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCATTCCATGCACAATAAGAGTGAGCCAACCTGGGATTGGAAGGATGAGCAAGGATTTTCTGCACTTCGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003183-8-9,8-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGACCCTCATACAGG
R:
ATCCCAGGTTGGCTCACTCTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development