HsaALTA1005904-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000074527 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:HGNC:13658]
Coordinates
chr12:95682707-95683711:-
Coord C1 exon
chr12:95683498-95683711
Coord A exon
chr12:95682815-95682822
Coord C2 exon
chr12:95682707-95682814
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
ATCATGTTCTATTTTGTTAGCCA
3' ss Score
3.17
Exon sequences
Seq C1 exon
CGTGTTCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCTATCACCGGAGACTGCATCAGCAG
Seq A exon
CCACACAG
Seq C2 exon
ACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAGGATGCGCAGGGGTTTTCTGCACTTCTACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074527-33-29,33-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=79.2)
A:
NA
C2:
PF0175916=NTR=PU(5.8=15.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTATCACCGGAGACTG
R:
CCAGGCTGGTTCGCTCTTATT
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains