GgaALTA0006058-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011406 | NTN4
Description
NA
Coordinates
chr1:47504064-47505024:-
Coord C1 exon
chr1:47504808-47505024
Coord A exon
chr1:47504177-47504179
Coord C2 exon
chr1:47504064-47504176
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCTCTCCTTTTCCCCCAGCAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
CCTGCTCCTGCCACCCTCTGGGATCGGCCGCGCTCCCCCTGGGCCCCCGCACCTTCTGCGACCCCAGCACCGGTGACTGCCCCTGCAAGCCTGGCGTGGCGGGGCCGCGCTGTGACCGCTGCCTGCCCGGATACTGGGGCTTCGGCACCAGCGGCTGCCGGCCCTGCGACTGCGCCCGGAGCTGCCACCCTCTCACTGGCGATTGCCACAGCAGCAG
Seq A exon
CAG
Seq C2 exon
TGTGGATGCAAGCTGGCAGCAAGAAGTGCTGCCCTTCCAACCAACACTCAACGAGAGCAAGCCTGCCTGGGGCTGGGAGGATGAGCAGGGCTTCTCAGCTCTGCGGCACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011406-6-7,6-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=78.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCTCACTGGCGATTG
R:
GGCTTGCTCTCGTTGAGTGTT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]