BtaALTA0020881-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39263218-39263575:+
Coord C1 exon
chr19:39263218-39263362
Coord A exon
NA
Coord C2 exon
chr19:39263493-39263575
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GAAACTTCGGCTTCACTCAGTTT
3' ss Score
1.93
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGCTCCAACGTCCACGAGGTACAGGGGGCTGTGTTCAGCCGGAGTGGCCGTGTCCTCCACCGACTCTTTGGAAAGTGGCATGAGGGGCTGTACCGTGGACCCCCGCCGGGCGGTCAGTGCATCTGGAAGCCCA
Seq A exon
NA
Seq C2 exon
TTTGCCTTGGAGCTGAATGAGCTGACTGCAGAGCTGAAACGGTCCCTGCCTTCCACGGACACGCGGCTCCGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-21-23,21-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCACCGACTCTTTGGAA
R:
GAAGGCAGGGACCGTTTCAG
Band lengths:
134-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development