BtaALTA0020881-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39263218-39263575:+
Coord C1 exon
chr19:39263218-39263362
Coord A exon
chr19:39263449-39263492
Coord C2 exon
chr19:39263493-39263575
Length
44 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GCCCCCTGCCTTCCCCCTAGACT
3' ss Score
10.45
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGCTCCAACGTCCACGAGGTACAGGGGGCTGTGTTCAGCCGGAGTGGCCGTGTCCTCCACCGACTCTTTGGAAAGTGGCATGAGGGGCTGTACCGTGGACCCCCGCCGGGCGGTCAGTGCATCTGGAAGCCCA
Seq A exon
ACTCAATGCCCCCAAACTATGAGCGAAACTTCGGCTTCACTCAG
Seq C2 exon
TTTGCCTTGGAGCTGAATGAGCTGACTGCAGAGCTGAAACGGTCCCTGCCTTCCACGGACACGCGGCTCCGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-21-23,21-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCACCGACTCTTTGGAA
R:
GAAGGCAGGGACCGTTTCAG
Band lengths:
134-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development