RnoALTA0027701-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:85002255-85002610:+
Coord C1 exon
chr10:85002255-85002399
Coord A exon
chr10:85002484-85002527
Coord C2 exon
chr10:85002528-85002610
Length
44 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAGCTCCTTGCCTCCCCCAGACT
3' ss Score
6.63
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCTAACATCCATGAGGTACAAGGTGCGGTGCTTAGCAGGAGTGGCCGCGTCCTCCACCGCCTCTTCGGGAAGTGGCATGAGGGACTGTACCGAGGCCCCCCACCGGGTGGGCAGTGCATTTGGAAACCCA
Seq A exon
ACTCGATGCCCCCAGACCATGAGCGAAACTTCGGGTTCACGCAG
Seq C2 exon
TTTGCCCTGGAGTTGAATGAGCTGACGGCAGAGCTGAAGAGGACGCTGCCTTCCACTGACACACGGCTACGGCCTGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-26-33,26-32,26-31,26-30-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGGGAAGTGGCATGAG
R:
GTAGCCGTGTGTCAGTGGAAG
Band lengths:
140-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]