MmuALTA0012599-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97067205-97067560:+
Coord C1 exon
chr11:97067205-97067349
Coord A exon
chr11:97067434-97067448
Coord C2 exon
chr11:97067449-97067560
Length
15 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAGCTCCTTGCTTCCCCCAGATT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCCAACATCCATGAGGTACAAGGTGCGGTGCTTAGTAGGAGTGGCCGCGTCCTCCACCGCCTCTTCGGGAAGTGGCATGAGGGGCTGTACCGAGGCCCCCCACCGGGTGGGCAGTGCATTTGGAAACCCA
Seq A exon
ATTCGATGCCTCCAG
Seq C2 exon
ACCATGAGCGAAACTTCGGGTTCACTCAGTTTGCCCTGGAACTGAATGAGCTGACGTCAGAGCTGAAGCGGACCCTGCCTTCCACTGACACACGGCTCCGACCTGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-38-32,38-31,38-30-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGGGAAGTGGCATGAG
R:
GGCAAACTGAGTGAACCCGAA
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types