HsaALTA1000525-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47808864-47809220:-
Coord C1 exon
chr17:47809076-47809220
Coord A exon
chr17:47808947-47808990
Coord C2 exon
chr17:47808864-47808946
Length
44 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AGCCCCTTGCCTTCCCCCAGACT
3' ss Score
8.2
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCCAATGTCCACGAGGTGCAGGGCGCTGTGCTCAGTCGGAGTGGCCGTGTCCTCCACCGACTCTTTGGGAAGTGGCACGAGGGGCTGTACCGGGGACCCACGCCAGGTGGCCAGTGCATCTGGAAACCCA
Seq A exon
ACTCAATGCCCCCCGACCATGAGCGAAACTTCGGCTTCACCCAG
Seq C2 exon
TTTGCCTTGGAGCTGAATGAGCTGACAGCAGAGCTGAAACGGTCGCTGCCTTCCACCGACACGAGACTCCGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-32-36,32-35,32-34-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCGACTCTTTGGGAAGT
R:
GAGTCTCGTGTCGGTGGAAGG
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains